The Operating System for
Equine Genotype-to-Phenotype
Decode to Decide. We transform genomic data into actionable insights — from DNA to racetrack performance, from genotype to commercial value.
The world's most comprehensive equine genomics database: 40.15M+ variants, 400+ breeds, 49,697 causal variants, and a proprietary 102-gene NCDS model for phenotype prediction.
The Global Leader in
Equine Genomics Infrastructure
Building the genomic data infrastructure for the global equine industry
Genomic data as the foundation of trust,
reshaping the equine value chain
GenoMatrix is the world's leading equine genomics technology provider. Built on the EquCab 3.0 reference genome, we have constructed the most comprehensive equine variant database to date — covering 400+ breeds, 40.15 million+ variant positions, and 49,697 causal variants stratified by Tier A/B/C classification, along with the world's only complete equine structural variant library.
Through our proprietary NCDS v3.4 model (Neuro-Centric Differentiable System), we achieve precise genotype-to-phenotype prediction — spanning hereditary disease risk, athletic aptitude classification, and breed identification across all major equine populations worldwide.
Our Jump™ product suite covers five core domains, providing end-to-end genomics solutions for breeding farms, trading platforms, racing authorities, and government conservation programs. With 6.2 million+ horses in China alone, the market demands a genomic data infrastructure upgrade.
Scientific Rigor
Every variant annotated with multi-layered evidence — VEP, SIFT, PolyPhen-2, and experimental validation. 90% core gene verification rate across 102 NCDS genes.
Unmatched Global Coverage
400+ breeds worldwide with allele frequency data. The most comprehensive coverage of Asian, European, and American equine populations in a single database.
Independent Third-Party Verification
Genomics-powered verification for equine transactions — hereditary disease risk, pedigree authenticity, and athletic potential assessment as a neutral third party.
Core Capabilities
33 specialized capabilities, 27 with undisputed global leadership — backed by data, proven by scale
Complete Equine Variant Library
The world's only equine whole-genome variant database covering SNP, Indel, and SV types, with allele frequency data across 400+ breeds.
VEP-Annotated Transcripts
The largest VEP (Variant Effect Predictor) annotation set for equine species, with complete transcript-level variant effect prediction coverage.
SIFT / PolyPhen Dual Coverage
The most comprehensive dual-algorithm coverage for missense variant functional prediction — both SIFT and PolyPhen-2 scores for every variant.
Causal Variant Database
Tier A/B/C stratified causal variants integrating multi-omics evidence from WGS and GWAS studies — the largest equine causal variant database globally.
Complete Structural Variant Library
The world's only complete equine structural variant database covering all five major types: deletions, insertions, inversions, duplications, and copy number variants.
Gene Regulatory Network
A gene regulatory network of 5,178 nodes and 125,342 edges, revealing ACTIVATE, INHIBIT, and MODULATE causal relationships between genes.
Global Breed Coverage
Allele frequency data for 400+ equine breeds worldwide. From Thoroughbreds to Mongolian horses, Arabians to Miniature Horses — complete representation.
Chr1 Speed Gene Cluster
60,512 SNP markers in the chromosome 1 speed gene cluster, providing ultra-high resolution markers for athletic performance genetic analysis.
NCDS v3.4 Architecture
102-gene Neuro-Centric Differentiable System with 90% core gene validation rate. 7 athletic scoring engines powering 25 breed-specific product panels.
Jump™ Product Suite
Five product lines covering the full equine genomics pipeline — from hereditary health to athletic performance, from identity verification to functional stratification
JumpHealth™
Whole-genome sequencing-based hereditary disease risk assessment system. Covers 8+ major hereditary diseases with Clear / Carrier / At-Risk tri-state evaluation for breeding safety decisions.
- HYPP — Hyperkalemic Periodic Paralysis
- PSSM1 — Polysaccharide Storage Myopathy
- MH — Malignant Hyperthermia
- JEB / HERDA / GBED — Rare disease screening
JumpID™
High-precision genetic identity platform built on 40.15M+ variant positions. Enables unique individual identification, parentage verification, breed purity analysis, and population diversity assessment.
- Unique genetic fingerprinting
- Parentage and kinship verification
- Breed purity and pedigree tracing
- Population genetic diversity metrics
JumpChain™
Causal regulatory network and knowledge graph engine. Reveals ACTIVATE, INHIBIT, and MODULATE regulatory relationships between genes, building complete causal chains from upstream regulators to downstream phenotypes.
- 125,342 causal regulatory edges
- Upstream / downstream causal chain tracing
- Interactive force-directed graph visualization
- Multi-omics evidence integration (WGS / GWAS)
JumpSport™
Athletic aptitude prediction system powered by the NCDS v3.4 Neuro-Skeletal-Developmental model. Precisely matches individuals to Sprint, Endurance, Dressage, Jumping, and Racing disciplines.
- 5-dimensional athletic aptitude classification
- 8-module phenotype vector analysis
- 7 composite athletic ability assessments
- 400+ breed baseline data
JumpHierarchy™
Multi-level gene functional classification system based on functional importance. From core regulatory genes to peripheral modifiers — systematic management of equine genome functional annotations and causal stratification.
- Tier A / B / C causal stratification
- Core / Modifier / Candidate three-tier system
- Multi-level gene function taxonomy
- 25 breed-specific product panels
Solutions for Every Stakeholder
From breeding farms to trading platforms, from racetracks to conservation programs — genomics-driven decision making at every critical point
Hereditary Disease Screening
Pre-breeding whole-genome screening for stallions and broodmares. Identify risks for HYPP, PSSM, and 6+ hereditary diseases to reduce breeding losses and improve offspring health outcomes.
JumpHealth™Athletic Performance Prediction
NCDS model-based prediction of athletic aptitude across sprint, endurance, dressage, and jumping disciplines. Supports training direction decisions and purchase evaluations.
JumpSport™Breed Identification & Pedigree Tracing
Individual genetic fingerprinting based on 40.15M+ variant positions. Enables breed identification, parentage verification, and pedigree purity analysis with molecular evidence.
JumpID™Transaction Verification
Independent third-party genomic verification for equine transactions — hereditary health status, pedigree authenticity, and athletic potential assessment. Eliminating information asymmetry.
Full Product SuiteGovernment Conservation Programs
Genomic data support for breed conservation programs. Establishing genetic diversity baselines and informing conservation strategies for indigenous equine populations.
Data InfrastructureBreeding Decision Support
Causal regulatory network and phenotype prediction-powered breeding optimization. Balancing hereditary disease risk, athletic performance, and conformation traits across multiple dimensions.
JumpChain™ + JumpSport™Built on Scientific Excellence
From raw sequencing data to actionable insights — a fully proprietary analysis engine
🧠 NCDS v3.4 Model
Neuro-Centric Differentiable System — a 102-gene neuro-skeletal-developmental model. Integrating neural regulation, skeletal development, and metabolic pathway analysis for multi-layer phenotype prediction. 90% core gene validation rate.
📊 Knowledge Graph Engine
5,178 nodes and 125,342 edges gene regulatory network with interactive force-directed graph visualization. Real-time zoom, drag, and node drill-down capabilities revealing causal regulatory relationships.
🗄️ Data Infrastructure
982 data tables, 41,896 gene annotations, 40.15 million variant positions. Full annotation pipeline built on the EquCab 3.0 reference genome. 22 GB complete database.
📡 RESTful API
16 standardized API endpoints supporting gene queries, phenotype analysis, JumpHealth reports, athletic classification, and more. Complete Swagger documentation available.
🌐 Global Breed Coverage
Allele frequency data for 400+ equine breeds worldwide. From Thoroughbreds to Mongolian horses, Arabians to Miniature Horses — comprehensive representation across all major equine populations.
🔐 Evidence Traceability
Every causal edge annotated with WGS/GWAS evidence sources, distinguishing experimental vs. predicted confidence levels. 49,697 causal variants managed with Tier A/B/C stratification.
Trusted by Industry Leaders
GenoMatrix's hereditary disease screening has reduced our breeding losses by 40%. The JumpHealth reports are scientifically rigorous and actionable.
The NCDS athletic aptitude model's accuracy impressed us. It significantly aids our assessment of young horses' training direction and market value.
GenoMatrix is the only platform globally with comprehensive Chinese native breed genomic data. Irreplaceable for our conservation programs.
Princeton · Hong Kong · Shanghai
Three Centers, Global Synergy
Princeton Research Center
Frontier research · North America academic collaboration · Technology R&D
Hong Kong Operations HQ
Global operations management · APAC client support · Compliance & certification · Technology transfer
Shanghai R&D Center
Core R&D · Whole-genome data analysis · Database operations
Decode to Decide
From genotype to phenotype, from data to decisions.
GenoMatrix is redefining the analytical paradigm of equine genomics.
Partner with us to unlock the genomic potential of every horse.
📧 contact@genomatrix.ai · 🌐 genomatrix.ai · 📍 Shanghai, China